Genomics Libraries - Page 7

The ViennaRNA Package

C 201Updated: 1 y ago License: Proprietary (Proprietary)

This Snakemake pipeline implements the GATK best-practices workflow

Python 200Updated: 1 y ago License: Permissive (MIT)

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Python 199Updated: 1 y ago License: Proprietary (Proprietary)

Ribbon diagrams of proteins in #golang.

Go 199Updated: 4 y ago License: Permissive (MIT)

An open-source toolkit for large-scale genomic analysis

Scala 198Updated: 3 y ago License: Permissive (Apache-2.0)

TCR and BCR assembly from RNA-seq data

C 198Updated: 2 y ago License: Strong Copyleft (GPL-3.0)

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

Python 197Updated: 2 y ago License: Proprietary (Proprietary)

A fast approximate aligner for long DNA sequences

C++ 197Updated: 2 y ago License: Proprietary (Proprietary)

Single cell perturbation prediction

Python 196Updated: 2 y ago License: Strong Copyleft (GPL-3.0)

This is the alpha version of the CellOracle package

Python 196Updated: 2 y ago License: Permissive (Apache-2.0)

Analysis Pipeline for Single Cell ATAC-seq

R 195Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Python 194Updated: 2 y ago License: Strong Copyleft (GPL-3.0)

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Python 194Updated: 2 y ago License: Strong Copyleft (GPL-3.0)

Structural variation and indel detection by local assembly

C++ 194Updated: 2 y ago License: Strong Copyleft (GPL-3.0)

Next generation sequencing reads de novo assembler.

C 193Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

Quick mining and visualization of NGS data by integrating genomic databases

R 193Updated: 4 y ago License: Strong Copyleft (GPL-2.0)

NCBI Datasets is an experimental resource for finding and building datasets

Jupyter Notebook 192Updated: 2 y ago License: Proprietary (Proprietary)

Examples of single-cell genomic analysis accelerated with RAPIDS

Jupyter Notebook 192Updated: 3 y ago License: Permissive (Apache-2.0)

Pairwise Sequence Alignment Library

C 191Updated: 2 y ago License: Proprietary (Proprietary)

A genome browser that shows long reads and complex variants better

JavaScript 190Updated: 4 y ago License: Permissive (MIT)

Single RNA-seq data analysis with R (Finland, May, 2019)

HTML 190Updated: 1 y ago License: No License (No License)

Reads simulator

C 190Updated: 3 y ago License: No License (No License)

Tool to plot synteny and structural rearrangements between genomes

Python 190Updated: 2 y ago License: Permissive (MIT)

Fast genome analysis from unassembled short reads

JavaScript 189Updated: 2 y ago License: Permissive (Apache-2.0)

Abstraction bin tool

JavaScript 189Updated: 2 y ago License: Permissive (MIT)

:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

R 189Updated: 2 y ago License: Permissive (Apache-2.0)

Python package with helper tools for the nf-core community.

Python 188Updated: 2 y ago License: Permissive (MIT)

Kraken taxonomic sequence classification system

C++ 188Updated: 4 y ago License: Strong Copyleft (GPL-3.0)

Hi~ 这里是 回形针 PaperClip 非官方的资料整理仓库，我们迫切的希望您的帮助整理，这将加速我们的网站维护每一期的文字稿及图片内容。

PHP 188Updated: 2 y ago License: No License (No License)

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Python 187Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

Long read / genome alignment software

C 186Updated: 1 y ago License: Proprietary (Proprietary)

Multi-subject Single Cell Deconvolution

R 186Updated: 2 y ago License: Strong Copyleft (GPL-3.0)

C++ 186Updated: 3 y ago License: Permissive (Unlicense)

Unified biological sequence manipulation in Python

Python 186Updated: 2 y ago License: Permissive (Apache-2.0)

Visualization and analysis software for Hi-C data -

Java 185Updated: 2 y ago License: Permissive (MIT)

Shell 185Updated: 4 y ago License: Permissive (MIT)

MISO: An open-source LIMS for NGS sequencing centres

Java 184Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

Official shim repo for Highcharts releases

JavaScript 184Updated: 3 y ago License: No License (No License)

Cloudera Manager Extensibility Tools and Documentation.

Java 183Updated: 1 y ago License: Permissive (Apache-2.0)

Finds SNP sites from a multi-FASTA alignment file

C 183Updated: 2 y ago License: Proprietary (Proprietary)

count DNA sequence reads in BAM files

Python 182Updated: 3 y ago License: Permissive (MIT)

cairo's central repository

C 182Updated: 2 y ago License: Proprietary (Proprietary)

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

C++ 181Updated: 2 y ago License: Proprietary (Proprietary)

C++ 181Updated: 4 y ago License: No License (No License)

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Go 180Updated: 4 y ago License: Permissive (MIT)

A Neo4j backed ontology store

Java 179Updated: 4 y ago License: Permissive (Apache-2.0)

Fast and accurate gene fusion detection from RNA-Seq data

C++ 179Updated: 1 y ago License: Proprietary (Proprietary)

KubeGene - A turn-key Genome Sequencing workflow management framework

Go 179Updated: 4 y ago License: Permissive (Apache-2.0)

Contains files for the deep learning in genomics primer.

Jupyter Notebook 179Updated: 3 y ago License: No License (No License)

Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.

Python 178Updated: 4 y ago License: Permissive (Apache-2.0)