Prescription writing and patient management software in java,javaFX
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CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
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Phenotype and genotype-based patient similarity
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A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials
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sub-cortical_segmentationby sergivalverde
Python 
11 Version:Current License: Permissive (BSD-3-Clause)
Sub-cortical brain tissue segmentation using CNN
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🎺 Plot DNA digestion band patterns with Python
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GREP: Genome for REPositioning drugs
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Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
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U-Net for biomedical image segmentation
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CAFU: A Galaxy framework for exploring unmapped RNA-Seq data
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An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
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GPS-based Imaging Geodesy toolbox in Python. [Improved from PyGPS]
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mass spectrometry proteomics in ruby
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R package for viewing mutation needle lollipop plot widgets
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Simple Dashboard to monitor Coronavirus 🦠(COVID-19) in Australia
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A Patient Generation tool, which supports the creation of randomized Patient records using FHIR, HL7v2, and HL7v3 (Pan-Canadian Messages).
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A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
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Detecting-Cheating-in-Chessby moritzhambach
Python 11 Version:Current
License: No License (No License)
License: No License (No License)Can chess engine use be detected just from the moves on the board? Let's try, using a CNN - LSTM architecture.
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Segmentation of white matter hyperintensities using 3D U-net
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Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
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Fork of ricopili for development of pipeline for family-based data
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Compliance test suite for the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
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Reliable Genome project
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Super-resolution radial fluctuations (SRRF)
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A efficient peak finder for high coverage ChIP-seq experiments, written in python.
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Pipeline for Evaluating Prokaryotic References
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Encore Analysis Server
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An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
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Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation
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A responsive chatbot AI that helps you develop medical insurance appeals
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Predicts if Protein will reside in the protein corona on the surface of engineered nanomaterials
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Generate the UMI count matrix from CEL-Seq2 sequencing data
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An Attention-based Bi-GRU-CapsNet Model for Hypernymy Detection between Compound Entities
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Scripts used to generate the ClinVar conflicting classifications dataset on Kaggle
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Stochastic PDHG with Arbitrary Sampling and Imaging Applications
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SwasthyaChain-BlockChain-Based-Health-Management-Systemby gyaneshanand
Python 10 Version:Current License: No License (No License)
License: No License (No License)The project aims to use blockchain technology to create a user-focused electronic health record whilst maintaining a single true version of the user’s data.Swasthya Mitra is a decentralised platform that enables secure, fast and transparent exchange and usage of medical data.
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Segmentation of Blood Vessels from 3D Medical Image
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Big-Data-Analytics-in-Health-Careby dpaduvalli3
Python 10 Version:Current License: No License (No License)
License: No License (No License)Big Data Analytics in Health Care: This course introduced big data techniques and tools for analyzing and solving health care problems.
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Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI
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Code supporting the recent preprint Markello et al., 2020
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US Specific Coronavirus Dashboard's API, used for tracking current cases by county, state, COVID-19, hospital bed info, twitter feed, and news feed.
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"Help us understand how geography affects virality."
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Medical-AI is a AI framework specifically for Medical Applications https://aibharata.github.io/medicalAI/
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Remote monitoring of Covid-19 patients via REDCap survey tools
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Integrating AI to Clinical Workflow
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Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles
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Dr-Assistantby kmrifat
Prescription writing and patient management software in java,javaFX
Java 11Updated: 4 y ago License: Permissive (Apache-2.0)
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cgviewby paulstothard
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Java 11Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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patient-similarityby buske
Phenotype and genotype-based patient similarity
Python 11Updated: 4 y ago License: Permissive (MIT)
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matchminer-apiby dfci
A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials
Python 11Updated: 3 y ago License: No License (No License)
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sub-cortical_segmentationby sergivalverde
Sub-cortical brain tissue segmentation using CNN
Python 11Updated: 4 y ago License: Permissive (BSD-3-Clause)
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BandWagonby Edinburgh-Genome-Foundry
🎺 Plot DNA digestion band patterns with Python
Python 11Updated: 4 y ago License: Permissive (MIT)
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GREPby saorisakaue
GREP: Genome for REPositioning drugs
Python 11Updated: 4 y ago License: Proprietary (Proprietary)
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divineby hwanglab
Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
Python 11Updated: 4 y ago License: No License (No License)
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radnetby adhiraiyan
U-Net for biomedical image segmentation
Python 11Updated: 4 y ago License: Permissive (MIT)
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CAFUby cma2015
CAFU: A Galaxy framework for exploring unmapped RNA-Seq data
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open3spn2by cabb99
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
Python 11Updated: 4 y ago License: Permissive (MIT)
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GigPyby ymcmrs
GPS-based Imaging Geodesy toolbox in Python. [Improved from PyGPS]
Python 11Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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mspireby princelab
mass spectrometry proteomics in ruby
Ruby 11Updated: 5 y ago License: Proprietary (Proprietary)
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mutsneedleby freezecoder
R package for viewing mutation needle lollipop plot widgets
JavaScript 11Updated: 4 y ago License: No License (No License)
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covid-19-australiaby cthroo
Simple Dashboard to monitor Coronavirus 🦠(COVID-19) in Australia
JavaScript 11Updated: 4 y ago License: No License (No License)
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patient-generatorby MohawkMEDIC
A Patient Generation tool, which supports the creation of randomized Patient records using FHIR, HL7v2, and HL7v3 (Pan-Canadian Messages).
C# 11Updated: 4 y ago License: Permissive (Apache-2.0)
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eltetradoby tzok
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
Python 11Updated: 2 y ago License: Permissive (MIT)
11Updated: 2 y ago License: Permissive (MIT)Support
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Detecting-Cheating-in-Chessby moritzhambach
Can chess engine use be detected just from the moves on the board? Let's try, using a CNN - LSTM architecture.
Python 11Updated: 4 y ago License: No License (No License)
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WMH2017by jyu-theartofml
Segmentation of white matter hyperintensities using 3D U-net
Python 11Updated: 4 y ago License: No License (No License)
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neurobindby Kyubyong
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
Python 11Updated: 4 y ago License: Permissive (Apache-2.0)
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picopiliby Nealelab
Fork of ricopili for development of pipeline for family-based data
Python 11Updated: 4 y ago License: No License (No License)
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complianceby ga4gh
Compliance test suite for the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Java 10Updated: 7 y ago License: Permissive (Apache-2.0)
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wtchg-rgby popitsch
Reliable Genome project
Java 10Updated: 7 y ago License: Proprietary (Proprietary)
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NanoJ-SRRFby HenriquesLab
Super-resolution radial fluctuations (SRRF)
Java 10Updated: 4 y ago License: Proprietary (Proprietary)
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piqueby ryneches
A efficient peak finder for high coverage ChIP-seq experiments, written in python.
Python 10Updated: 5 y ago License: No License (No License)
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chipexoby ialbert
Python 10Updated: 6 y ago License: No License (No License)
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peprby usnistgov
Pipeline for Evaluating Prokaryotic References
Python 10Updated: 8 y ago License: No License (No License)
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outLyzerby EtieM
An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
Python 10Updated: 5 y ago License: No License (No License)
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nf1_inactivationby greenelab
Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation
Python 10Updated: 5 y ago License: Permissive (BSD-3-Clause)
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med-appealby kevchn
A responsive chatbot AI that helps you develop medical insurance appeals
Python 10Updated: 5 y ago License: No License (No License)
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capstoneby auriml
Python 10Updated: 4 y ago License: No License (No License)
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ENM-Protein-Predictorby mfindlay23
Predicts if Protein will reside in the protein corona on the surface of engineered nanomaterials
Python 10Updated: 5 y ago License: Permissive (MIT)
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celseq2by yanailab
Generate the UMI count matrix from CEL-Seq2 sequencing data
Python 10Updated: 4 y ago License: Permissive (BSD-3-Clause)
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HPViewerby yuhanH
Python 10Updated: 4 y ago License: No License (No License)
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medicalHypernymyby ECUST-NLP-Lab
An Attention-based Bi-GRU-CapsNet Model for Hypernymy Detection between Compound Entities
Python 10Updated: 4 y ago License: No License (No License)
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clinvar-kaggleby arvkevi
Scripts used to generate the ClinVar conflicting classifications dataset on Kaggle
Python 10Updated: 4 y ago License: Permissive (MIT)
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spdhgby mehrhardt
Stochastic PDHG with Arbitrary Sampling and Imaging Applications
Python 10Updated: 4 y ago License: Weak Copyleft (MPL-2.0)
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SwasthyaChain-BlockChain-Based-Health-Management-Systemby gyaneshanand
The project aims to use blockchain technology to create a user-focused electronic health record whilst maintaining a single true version of the user’s data.Swasthya Mitra is a decentralised platform that enables secure, fast and transparent exchange and usage of medical data.
Python 10Updated: 4 y ago License: No License (No License)
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3D_Medical_Imagingby vinjk
Segmentation of Blood Vessels from 3D Medical Image
Python 10Updated: 4 y ago License: No License (No License)
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Big-Data-Analytics-in-Health-Careby dpaduvalli3
Big Data Analytics in Health Care: This course introduced big data techniques and tools for analyzing and solving health care problems.
Python 10Updated: 5 y ago License: No License (No License)
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FatSegNetby Deep-MI
Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI
Python 10Updated: 4 y ago License: Permissive (Apache-2.0)
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markello_ppmisnfby netneurolab
Code supporting the recent preprint Markello et al., 2020
Python 10Updated: 4 y ago License: Permissive (BSD-3-Clause)
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back-endby ncov19-us
US Specific Coronavirus Dashboard's API, used for tracking current cases by county, state, COVID-19, hospital bed info, twitter feed, and news feed.
Python 10Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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task-geoby CoronaWhy
"Help us understand how geography affects virality."
Python 10Updated: 4 y ago License: Permissive (MIT)
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medicalAIby aibharata
Medical-AI is a AI framework specifically for Medical Applications https://aibharata.github.io/medicalAI/
Python 10Updated: 4 y ago License: Permissive (Apache-2.0)
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corona-databy msghera
Python 10Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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txtmonby rmhcovid
Remote monitoring of Covid-19 patients via REDCap survey tools
Python 10Updated: 4 y ago License: Permissive (BSD-3-Clause)
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ai-4-clinical-workflowby zenetio
Integrating AI to Clinical Workflow
Python 10Updated: 4 y ago License: Permissive (MIT)
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dpi1by hkawaji
Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles
Ruby 10Updated: 5 y ago License: Strong Copyleft (GPL-2.0)
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