Pharma and Life Sciences Libraries - Page 4

HiGHmed Data Sharing Framework

Java 32Updated: 1 y ago License: Permissive (Apache-2.0)

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Python 32Updated: 3 y ago License: No License (No License)

Brain Segmentation on MRBrains18

Python 31Updated: 3 y ago License: Permissive (MIT)

LLMNR/NBNS/mDNS Spoofing Detection Toolkit

C# 31Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

MetaPred: Meta-Learning for Clinical Risk Prediction with Limited Patient Electronic Health Records (KDD 2019)

Python 31Updated: 3 y ago License: No License (No License)

Tensorflow Implementation of Multiple Landmark Detection using Multi-Agent Reinforcement Learning Paper

Python 31Updated: 3 y ago License: Permissive (Apache-2.0)

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

Python 30Updated: 3 y ago License: Permissive (MIT)

A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.

Python 30Updated: 3 y ago License: Permissive (BSD-3-Clause)

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Python 30Updated: 1 y ago License: No License (No License)

Agent-based simulation model for COVID-19 spread in society and patient outcomes

Python 30Updated: 2 y ago License: Strong Copyleft (AGPL-3.0)

Georgia Tech FHIR Server Web Page

Java 30Updated: 3 y ago License: No License (No License)

Semantic Body Browser - a tool for graphically exploring an organism's body.

JavaScript 30Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

An open-source Laboratory Information Management System (LIMS) for Next-Generation Sequencing (NGS)

JavaScript 30Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

The tool takes the public through a series of questions to inform those who are concerned they may have contracted COVID-19.

JavaScript 30Updated: 2 y ago License: Permissive (Apache-2.0)

Clinic Management System web application is developed by using PHP & MySql and is designed to automate internal work flows and manage different aspect of a small to medium size medical clinics. The repository moved to https://github.com/developers-af/phpci-clinic-management-system for further maintenance and development.

PHP 30Updated: 3 y ago License: Proprietary (Proprietary)

Meta-Omics Software for Community Analysis

Python 30Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

A wrapper for liftOver for converting plink genotype data between different genome reference builds

Python 29Updated: 3 y ago License: Strong Copyleft (GPL-2.0)

Kourami: Graph-guided assembly for HLA alleles

Java 29Updated: 3 y ago License: Permissive (BSD-3-Clause)

Open-source Blood Donation Platform

Java 29Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

Highly adaptable common interface for proteomics search and de novo engines

Java 29Updated: 1 y ago License: No License (No License)

This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

Python 29Updated: 3 y ago License: Proprietary (Proprietary)

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

Python 29Updated: 3 y ago License: Permissive (Apache-2.0)

Python utilities for building integrated views of TCGA data.

Python 29Updated: 3 y ago License: Proprietary (Proprietary)

Needleman-Wunsch and Smith-Waterman algorithms in python

Python 29Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

Structural variant caller for low-depth long-read sequencing data

Python 29Updated: 11 mo ago License: Strong Copyleft (GPL-3.0)

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

Python 29Updated: 11 mo ago License: No License (No License)

RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon

JavaScript 29Updated: 3 y ago License: Permissive (CC0-1.0)

Developer samples for Microsoft HealthVault

C# 29Updated: 3 y ago License: Proprietary (Proprietary)

Simultaneously-Collected Multimodal Lying Pose Dataset: Towards In-Bed Human Pose Monitoring under Adverse Vision Conditions (TPAMI 2022)

Python 29Updated: 1 y ago License: Permissive (MIT)

🐼 osparc-simcore simulation framework

Python 29Updated: 11 mo ago License: Permissive (MIT)

DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing

Python 28Updated: 3 y ago License: No License (No License)

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Java 28Updated: 3 y ago License: Permissive (MIT)

Benchmarking common tasks on proteins in various languages and packages

Python 28Updated: 3 y ago License: Permissive (MIT)

Deep Learning with Multimodal Representation for Pancancer Prognosis Prediction

Python 28Updated: 3 y ago License: No License (No License)

A metagenomic strategy for harnessing the chemical repertoire of the human microbiome

Python 28Updated: 1 y ago License: Strong Copyleft (GPL-3.0)

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

Python 28Updated: 3 y ago License: Permissive (Apache-2.0)

Genomic neighbor typing of bacterial pathogens using MinHash :rat:

Rust 28Updated: 2 y ago License: Permissive (MIT)

My own tools code for NGS data analysis (Next Generation Sequencing)

Python 28Updated: 3 y ago License: Permissive (MIT)

Lesion attributes segmentation for melanoma detection with multi-task U-Net

Python 28Updated: 3 y ago License: Permissive (MIT)

OpenMRS Concept Proposal Module

JavaScript 28Updated: 4 y ago License: No License (No License)

Predicts COVID-19 from PA view of X-ray when submitted on the website

JavaScript 28Updated: 3 y ago License: Permissive (MIT)

Smart India Hackathon 2019 project given by the Department of Atomic Energy

Python 28Updated: 3 y ago License: No License (No License)

A library for manipulating bioinformatics sequencing formats in Apache Spark

Java 27Updated: 3 y ago License: Proprietary (Proprietary)

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

Python 27Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

Segmentation of prostate from MRI scans

Python 27Updated: 3 y ago License: Strong Copyleft (GPL-3.0)

Compressed Sensing: From Research to Clinical Practice with Data-Driven Learning

Python 27Updated: 3 y ago License: Permissive (MIT)

Snakeyaml supporting android

Java 27Updated: 3 y ago License: Permissive (Apache-2.0)

Working repository to organize assets for the SIIM Stack

Ruby 27Updated: 3 y ago License: Permissive (MIT)

MiGA: Microbial Genomes Atlas

Ruby 27Updated: 1 y ago License: Weak Copyleft (Artistic-2.0)

A custom authorizer for securing the APIGateway URLs using Auth0

JavaScript 27Updated: 3 y ago License: No License (No License)