smk | SMK - Simple multimedia kit - C++ | Game Engine library
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SMK - Simple multimedia kit - C++ WebAssembly
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QUESTION
I have two rules on my Snakefile: one generates several sets of files using wildcards, the other one merges everything into a single file. This is how I wrote it:
...ANSWER
Answered 2022-Mar-07 at 11:43In rule generate
I think you don't want to escape the {chr}
wildcard, otherwise it doesn't get replaced. I.e.:
QUESTION
Sorry if this is gonna be probably a duplication of other questions, but I couldn't figure to debug what's going on in my case. Got a dataframe like this:
...ANSWER
Answered 2022-Feb-15 at 11:15The parameters are stored in a dataframe, and there is a handy utility for working with tabulated parameters, Paramspace
. Below is a rough take on your specific case, but it will need some adjustments for command syntax and paths.
First step is to reshape the data for easier workflow:
QUESTION
I have an application built with NextJs (and React) and mobx-state-tree (but could be context or redux) as a package manager. All the stores are created and handled in an npm package called SMK (state management kit) that I created to make the sub-stores reusable in my mobile and web application.
How it works:
- Create the sub-store with
models
,actions
andviews
on the SMK and export it as a module. - Add the SMK using
yarn add @my-repo/smk
. - Create the root store in my app and import the sub-store from SMK as a child of the root store.
- Build and start the app and everything is working well.
But I need to run and publish the SMK locally to make it easier development. The solution I used to use is yalc.
Using yalc and running it locally this is the process:
- In the SMK, runs
yarn start
. (This will donodemon --ignore src/index.ts -e js,ts,tsx,json --watch src/ --exec yalc push --scripts
) - In the APP, runs
yalc add @my-repo/smk
. (This will add a dependency like"@my-repo/smk": "file:.yalc/@my-repo/smk"
). - In the APP, runs
yarn build
and thenyarn start
And voila! Everything is working perfect, any change I did locally on my SMK is working perfectly on the APP.
BUT, when I run yarn dev
that do next dev
as default of NextJs it doesn't work.
Error explanation: As I only added the setTestingState
and testingState
locally, it's saying that it doesn't exist.
Possible reason: The fast refresh is not refreshing the cache properly.
I've tried:
- Add
// @refresh reset
to force it, but didn't work. - Stop and start the application.
- Build, start and then run dev. (works for build and not for dev)
What is the solution/workaround to solve this issue with yarn dev
and yalc
?
ANSWER
Answered 2021-Dec-20 at 17:33Looks like it's a bug on NextJs and we can find some devs asking to NextJs to allow us to disable the Fast Refresh, and looks like they don't care or just don't have the intention to change it.
So, I found a third-party library, next-remote-watch, that is solving this issue for me. Basically, is an alternative script to use instead of next dev
and it will do a quick and simply build and active a watcher.
At package.json
use
QUESTION
See below, I fail to understand why my parameters par1 and par2 are the same in spite of the .split() function.
See this self contained example which is runnable.
Your will need to do "touch id1-one.input id2-two.input" in the working directory.
...ANSWER
Answered 2021-Dec-11 at 22:20You should use an input function inside params
to get what you want:
QUESTION
I have the following problem, when I used the command below, it appears that snakemake cannot resolve the creation of the environment using the --use-conda option.
If I not use this option of snakemake and launch the snakefile in an appropriate environment created by conda and not by snakemake, the command execution is ok.
Did someone have the same problem ?
Thanks,
Command:
...ANSWER
Answered 2021-Sep-08 at 16:17It looks like your conda environment is broken, or you're running snakemake in an environment that doesn't have conda installed.
Look at the last line of the error message:
QUESTION
I have a very strange syntax error that I have been staring at for hours with no solution. I cannot figure out why/where the syntax error is coming from. This is my rule:
...ANSWER
Answered 2021-Oct-07 at 17:24Turns out that the problem was with indentation! Some lines had spaces and others had tabs. I replaced all the tabs with spaces and this fixed the problem.
QUESTION
hope you can help me solve my issue or tell me to submit report
I'm 'importing' a snakemake module from github in another snakefile, which is local. This appears to mess up the target of the local snakefile. When the 2nd snakefile is imported the target is no longer the one specified by rule 'all', but by some arbitrary (?) rule in the imported snakefile, even when the imported snakefile does not contain any relevant rules.
I've compiled an example set of two repo's on github which suffer from this problem (lpagie/repo1 and lpagie/repo2). From the repo1/readme.md:
==============
This repo is setup to illustrate a problem (?) with using snakemake modules from github
Clone this repo locally and run snakemake from a directory above the cloned
repo, using the wrapper run.sh
This snakefile will 'import' lpagie/repo2, which in current form only contains
outcommented rules and a rule which is (supposedly) not meaningful for repo1.
Running the snakemake of repo1 will not generate the output specified by rule
'all' (output/final
) but instead output generated by rule 'non-sense' ....
When the import of the repo2 module is outcommented from repo1/snakefile_1.smk, running the snakemake generates the expected outcome.
=============
Am I overlooking something obvious?
I'm using snakemake V 6.9.1, installed in conda
Here's the output I get running a clean install of repo1 and running the 'repo1/run.sh':
ANSWER
Answered 2021-Oct-06 at 17:32Your code to import rules from the remote module comes before rule all
. Therefore whichever rule is imported first determines the final output of the pipeline.
So just put the import after rule all
. Instead of this:
QUESTION
When using snakedeploy with a workflow remotely stored on github, what is the current best practice for that remote workflow to access files from its own "workflow/scripts/" or "resources/" directories?
E.g.: running
...ANSWER
Answered 2021-Oct-01 at 14:08As of snakemake version 6.8.1, the documentation got updated, and there is now an officially documented function for fetching such files: https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#accessing-auxiliary-source-files
This function internally does indeed rely on the infer_source / sourcecache.open sequence.
It does return a tupple with:
- the path
- the content of the file (from the cached content)
- automatic type identification
- whether file is local.
QUESTION
I have data similar to the NHANES data I call below. What I would like to do is loop over a list of several variables to create crosstabs. I would like to stick with the summarytools::ctable package because I want to call the chisq argument. However, happy to use another approach, so long as the chisquare is an option and I can still remove NAs.
Here is what works so far. I am able to use the function below to generate simple frequencies. However, I would like the name of the variable to print before the frequency table. The function first prints all of the variable names THEN goes on to generate the frequencies so that is issue # 1 that I am struggling with:
...ANSWER
Answered 2021-Sep-20 at 04:47To solve the 1st issue use a for
loop.
QUESTION
const UseStateObject = () => {
const [person, setPerson] = useState({
name: "SMK Kristen Immanuel Pontianak",
message: "SMK bisa SMK hebat",
});
const [button, setButton] = useState({
btn: "Kelasku",
});
const changeMessage = () => {
setPerson({ ...person, message: "Kelas XI TKJ 2" });
setButton({ ...button, btn: "Motto SMK" });
};
return (
<>
{person.name}
{person.message}
{button.btn}
);
};
export default UseStateObject;
...ANSWER
Answered 2021-Aug-16 at 06:12You don't have code to swap the values always, you are alwys setting it to Kelas XI TKJ 2. If you want to toggle it for every click you can do something like this:
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