tailor | A streaming layout service for front-end microservices | Microservice library
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kandi X-RAY | tailor Summary
A streaming layout service for front-end microservices
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QUESTION
I'm using FastAPI and I need to represent different STIX 2 objects (from MITRE ATT&CK) with a corresponding/equivalent Pydantic model in order to return them as a response JSON.
Let's consider the AttackPattern object.
...ANSWER
Answered 2021-Jun-11 at 08:46A possible and promising approach is to generate the Pydantic model starting from the corresponding JSON Schema of the STIX object.
Luckily enough the JSON schemas for all the STIX 2 objects have been defined by the OASIS Open organization on the GitHub repository CTI-STIX2-JSON-Schemas.
In particular, the JSON Schema for the Attack-Pattern is available here.
QUESTION
I work in bioscience field, mainly involved in data analysis. Lately, numbers are growing and things are getting more complicated by the use of multiple analysis techniques (most of them "omics" type) on various biological samples from the same set of individuals/patients/animals.
I would like to implement a better way of locally storing data and meta-data (here I refer to meta-data as the general data about the individuals/patients/animals, but also to meta-data about instrument used in assay) which would also allow me to perform meta-analysis (mainly using R, but I would like to have a solution that can also work with SPSS). I am searching for some guides to learn the basics of building, managing and using databases, optimally tailored to biology and "omics"application.
I could summarize my situation in the following image
In summary, over the same set of samples (individual - S1 to Sn), that would be the main entry in the database, we could perform a series of experimental assays, each of which resulting in some numeric data generally organized in a csv like format with the same id, accompanied by some meta data about the assay (instrument used and similar). The creation of new entries in the database would usually be via bulk upload of those csv files.
Essentially, I would like to collect and connect everything in one place, instead of having 1 folder for every project, with related R script and raw data. From R, I would then retrieve from the general database the data relevant to a certain project, and perform a set of analyses. As of now, I am interested in a local solution, but I would like to leave the eventual predisposition for remote access open
I have no background in databases, so I am open to any solution which would better fit my needs. For example, I have read that there are relational databases and graph databases (I do have some experience with ontologies) and can't decide which would be better. Any "digested" source of general information from users who have handled similar issues, any beginner tips, or any suggestion on best solution, would be of great benefit for me to try and start something.
...ANSWER
Answered 2021-May-25 at 19:26Actually, I disagree with the commenters who are criticizing this question, though I agree it is not specific to R or R-related programming. Maybe I just sympathize because I have been in a similar position. A better venue to ask something like this might be BioStars.
That said, I also work in academia, and I also had a similar problem. No one in my circles had a great answer.
From your diagram, it seems like you know something about relational databases, which is good. If you aren't familiar with sql-like syntax or relational database ideas, then definitely start there. I don't have a great suggestion on how to learn about these -- I had a class on mysql in college, and then started using sqlite and postgresql on my own. I very much appreciated the mysql class, so if you feel like you don't know sql-like syntax or relational database topics well, maybe you could find an online course (or take one at your university, if you are located at a school).
Specifically in R, I would start reading about connecting to a database from R/Rstudio
I use this predominantly through the RPostgresql package, which is an extension of the DBI package, I think.
Obviously get very comfortable with the tidyverse packages, if you aren't already. This is a great resource:
Since we're on the topic of Hadley Wickham, and since the topic of Hadley Wickam is related to R and R-programming, I don't feel bad saying you should read this, too:
https://vita.had.co.nz/papers/tidy-data.pdf
You'll need to learn some basics about servers. I understand that you're specifically interested in doing this locally, but I suspect that there will come a time that you'll need to be able to both host locally and remotely. At least, that has been my experience. In any case, you should be using linux (I hope this isn't too contentious a statement) on your local computer, which means essentially that dealing with a local database is more or less the same as dealing with one remotely (minus some security concerns). I find Nginx easier than Apache, but that is likely a matter of taste. I use Amazon AWS when I need a public server, though if your university has hosting services, you could do a price comparison. AWS has been cheaper and easier in my experience. To manage a served database, I use Django, which is a python package. If you choose to build a django managed database, I suggest using this cookiecutter (a python package template):
https://github.com/agconti/cookiecutter-django-rest
Finally, posted below is a link to a django database framework for a currently active project for which I'm managing the data. I'm going to include another link to a R package that I'm also messing around with, which is meant to absorb some of the database data, process it, and spit it out. The latter is very much under development. It isn't in a share-able state, but it would have helped me to see something like this, I think, when I started asking similar questions to yours, so I'm going to include it.
https://github.com/BrentLab/S288CR64_database
https://github.com/cmatKhan/brentlabRnaSeqTools
If you have questions specifically related to genomics data management, feel free to ask via my email. You'll find it on github.
QUESTION
I'm doing animal studies and using automated operant boxes that output massive csv files, I've got multiple animals running multiple sessions per day and so in order to make sense of my data I loop through multiple csv files and extract relevant data to a separate excel file. I managed to make almost all of the the code dynamic except for one crucial bit: I have to assign subject IDs to multiple ranges of rows that correspond to that subject's data.
The way I'm currently doing it is first extracting a list of [ID]'s of 16 subjects in the order the they were run on that day and then creating a new session order column in my dataframe that tells which session the data is for. Then I've made a blank 'ID' column to which I then manually assign each range of rows from session one to the first element in the [ID] list, then the session 2 to second element and so on, here is the code example:
...ANSWER
Answered 2021-May-25 at 13:53You should just create a map from session number to ID.
Assuming your sessions will always be numbered starting at 1, this would work:
QUESTION
I just installed Ionic with
...ANSWER
Answered 2021-May-21 at 07:36For some reason I couldn't get it to work on node version 16.2.0
.
However, using node version manager nvm
I installed a second instance of node, the LTS version 14.17.0
.
With this downgrade, the setup process works.
QUESTION
I am writing a CUDA program that will probably run on many different GPUs. I would like to know if CUDA provides some way of reading from code (either runtime or compile time) the capabilities of the current GPU, meaning the number of threads a single block can contain, and the maximum number of blocks, so I can tailor the launch of the kernel to optimally use all the resources.
I know it may sound like a silly question but I can't find any answers online.
Bonus question if it is not possible: I see here that someone says they know the Jetson TX1 has
2 SM’s - each with 128 cores. I read that per SM (which I understand there are 2) there can be a maximum of 16 active blocks, and 64 active warps (or 2048 active threads).
How can I find this info for a given GPU?
...ANSWER
Answered 2021-May-19 at 20:39I guess cudaGetDeviceProperties
seems to be what you are looking for.
QUESTION
I am experiencing a scenario where my indigenous recursive implementation program output's a nested list, very similar to a tree. The nested list designed is an abstraction of a complicated structure. What I would require, is to resolve the nested list into many different rows as much as combinations available (optionally implementing recursion).
Previously I tried anytree but my needs are complicated and though good, it was not yielding to my tailored demand. Please do take into account that the nested list is multi-dimensional
input 1
...ANSWER
Answered 2021-May-02 at 04:03You can use recursion with itertools.product
:
QUESTION
My company wants to conduct a pilot to see if providing doctors with certain risk information about their patients would help them make better decisions. Before we build a full scale app, we just want to determine if the information is useful to doctors, it helps patients, and if generating the data and getting it to doctors is even feasible. Unfortunately, due to institutional data security and privacy rules, I have to use Microsoft Teams messaging to test this. Otherwise, I'd use Microsoft Access VBA, loop through a list of emails, and send the tailored information that way. However, because I won't be able to easily encrypt emails like this (and it prone to people forgetting - unless there's a way to set up encryption from MS Access VBA) I can't use MS Access/Outlook.
So bottom line, say I have a dataset with 20 emails/Teams contact information of doctors, along with unique medical information about 1 of their patients. Aside from copying and pasting the data into a message, and sending it in Microsoft Teams for each doctor, is this a more automated way to do this? Think of this as sort of a Microsoft Teams mail merge.
...ANSWER
Answered 2021-Apr-29 at 07:39You can do it with Company communicator app template. Company Communicator is a custom Teams app that enables corporate teams to create and send messages intended for multiple teams or large number of employees over chat allowing organization to reach employees right where they collaborate. Please go through this sample. Hope that answers your question!
QUESTION
I have an image that has cereal items below:
The image has:
- 3 walnuts
- 3 raisins
- 3 pumpkin seeds
- 27 similar looking cereal
I wish to count them separately using opencv, I do not want to recognize them. So far, I have tailored the AdaptiveThreshold method to count all the seeds, but not sure how to do it separately. This is my scripts:
...ANSWER
Answered 2021-Apr-27 at 06:50Your lighting is not good, as HansHirse suggested, try normalizing the conditions in which you take your photos. There's, however, a method that can somewhat normalize the lighting and get it as uniform as possible. The method is called gain division. The idea is that you try to build a model of the background and then weight each input pixel by that model. The output gain should be relatively constant during most of the image. Let's give it a try:
QUESTION
I created a Java class to decorate another interface with generics. However, it always has some compiler errors. This is the tailored sample code that could reproduce the error.
...ANSWER
Answered 2021-Apr-14 at 23:33Remember, ?
is like a one-use new type variable.
Therefore, the ? super T
in your argument's BiFunction
generics, does not have to be the same type as the ? super T
as required by the testFunc
invocation.
This is fixable:
QUESTION
I am brand new to coding and am working my way thru the tech with tim kivy youtube turtorials. I am following his code for the most part but am trying to tailor it to the app I'm trying to develop. I am getting the following error message and have no idea how to fix it.
...ANSWER
Answered 2021-Apr-10 at 22:39Make your property names begin with a lowercase letter, and make sure your widget classes begin with an uppercase letter. Kv language uses this to distinguish between them, and by not following that rule you have it looking for a widget named FirstName.
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